rs52539146 SNP Detail

Summary

• ID
  rs52539146
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44388489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATATAAAT CTAGTGTCCA
  GTCCAGTGCT TGGAAAATAG TAGGTCTTCA GTAAATATTT ATTGAATGAC TAAGAAGGAA
  GGGTTAGTCA GAAAAGGAGT CCAAAAGAAG AAGAAGAAGA AGAAGAAGAA GAAGAAGAAG
  AAGAAGAAGA AGAAGAAGAA GACGACGACG ACGACTGAGT TATCAAAACT CACAAGAAGA
  R
  CTGGCTATGA TGGCGGAAGC CAGAACCCAG CTACTTGATA GGATGAGACA AGAGGTTTCC
  AAGTTCAGGG CCTGCTTGGG CTAGAGTGAG TTCAAGGCTA TCTCGGGCAA CTTTAGGGAG
  AATCTTTTTC AATTTTTAGA GAGGAAGAAG AGGGCTAGGG ATTTGGCTCA GTGGTAAAGT
  GTTGCCTAGC ACTGAGAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136396135	ENSMUSSNP1983766	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52539146					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44388489 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	1248 bp proximal
Cpgi21660	CpG island 21660	1964 bp proximal
Gm10023	predicted gene 10023	732 bp downstream
Gm22540	predicted gene, 22540	677 bp upstream
Gm47204	predicted gene, 47204	within coordinates
Rr195028	regulatory region 195028	889 bp distal
Rr203857	regulatory region 203857	923 bp distal
Rr206312	regulatory region 206312	311 bp proximal
Rr209143	regulatory region 209143	89 bp distal