rs52539710 SNP Detail

Summary

• ID
  rs52539710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128128408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATATTCATA CATAGTCACA CACACACCAC ACATATTCAC
  ACCCACTCAC ATTCAAACAC CACACACACA CACACACACA CACACACACG TATCACACAC
  Y
  ACACATACAC ACATACTCAT ACACATTCAC ACACACACAC CACAAGCTCA CTCCTTCTTT
  TCATGAGACA ATTTGTACTG CACATAACTC TTTAAGCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147556474	ENSMUSSNP2751718	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52539710					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128128408 () rs orientation: forward

Symbol	Name	Function Class
Rr564691	regulatory region 564691	1124 bp distal
Rr564692	regulatory region 564692	662 bp distal
Rr564693	regulatory region 564693	1238 bp proximal