rs52543117 SNP Detail

Summary

• ID
  rs52543117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:156075814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT CCAGATGGCT GATAGGTGGC
  R
  TTACATGGTC AGTGTGTGTG CATGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148124149	ENSMUSSNP5653694	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321444377	CHEV_4_155365466	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52543117					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156075814 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	mRNA-UTR
Cpgi15496	CpG island 15496	119 bp proximal
Rr377473	regulatory region 377473	860 bp upstream
Rr606627	regulatory region 606627	1959 bp distal
Rr606628	regulatory region 606628	828 bp distal
Rr606629	regulatory region 606629	within coordinates
Rr606630	regulatory region 606630	1217 bp proximal
Rr606631	regulatory region 606631	1282 bp proximal
Rr606632	regulatory region 606632	1293 bp proximal
Rr606633	regulatory region 606633	1535 bp proximal
Rr606634	regulatory region 606634	1896 bp proximal
Sdf4	stromal cell derived factor 4	1515 bp upstream
Tssr1404	transcription start site region 1404	1582 bp upstream
Tssr40748	transcription start site region 40748	1043 bp upstream
Tssr40749	transcription start site region 40749	1786 bp upstream
Tssr40750	transcription start site region 40750	1873 bp upstream
Tssr40751	transcription start site region 40751	1948 bp upstream
Tssr44987	transcription start site region 44987	974 bp downstream
Tssr44988	transcription start site region 44988	1247 bp downstream