rs52545107 SNP Detail

Summary

• ID
  rs52545107
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95181082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TGGCCAAAGG CATGCAGCCT TCTCTTCCTT CCCACCACCC
  ACCAGCACCA CCCTCTGTTG CCCAGGTCTG CCTGGATTAG CCACCCCGCC CCCAAATGAT
  S
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGAGTGTGA GGCCCTCTCT
  GCACTGTCAG GAAGTGGTAG AACACCATTT GGACAATCAC A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135510401	ENSMUSSNP6353262	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52545107					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95181082 () rs orientation: forward

Symbol	Name	Function Class
Prune1	prune exopolyphosphatase	Intron
Rr580881	regulatory region 580881	14 bp distal
Rr580882	regulatory region 580882	413 bp proximal
Rr580883	regulatory region 580883	872 bp proximal