rs52545878 SNP Detail

Summary

• ID
  rs52545878
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134127752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAAACCTA GTCAGCCATG AAAGGGAGAG GGGCGGGAGG
  GGCGGGCAGA ATATTTGCTA AACAGGTCCC CCATACAGCA CTCAAGCCTG GGGTTAGAAA
  S
  ACTAAGGATA ACTCTCATTC AGATTCAGTT CCGCTCTCCA CCTCACCCCG GTAACCCCCT
  CCCGCTCCCC CTTACCCCTC CACCCTCCCA GATCCACAGT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60846903	NES16014408	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52545878					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60846903	NES16014408	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134127752 () rs orientation: forward

Symbol	Name	Function Class
Castor2	cytosolic arginine sensor for mTORC1 subunit 2	835 bp upstream
Cpgi16713	CpG island 16713	207 bp proximal
Gm15627	predicted gene 15627	within coordinates
Rr621932	regulatory region 621932	within coordinates
Rr621933	regulatory region 621933	274 bp proximal
Tssr49079	transcription start site region 49079	779 bp upstream
Tssr49080	transcription start site region 49080	791 bp upstream
Tssr49081	transcription start site region 49081	854 bp upstream