rs52546125 SNP Detail

Summary

• ID
  rs52546125
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14929381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGC CTATCCAGTA CTTACCCAGT
  M
  CTTACTTATC CAGTACTTAC CCAGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321046999	CHEV_4_14856528	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52546125					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14929381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	456 bp proximal
Gm11837	predicted gene 11837	527 bp upstream
Gm68732	predicted gene, 68732	346 bp downstream
Rr589248	regulatory region 589248	within coordinates
Rr589249	regulatory region 589249	481 bp proximal
Rr589250	regulatory region 589250	1069 bp proximal
Rr589251	regulatory region 589251	1306 bp proximal
Tssr36545	transcription start site region 36545	479 bp upstream
Tssr36546	transcription start site region 36546	1238 bp upstream
Tssr36547	transcription start site region 36547	1328 bp upstream