rs52547087 SNP Detail

Summary

• ID
  rs52547087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57529797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGTCTG TGAGTCTGTG
  AGCCCAGCCT AGGCTAGTCT ACATATTGAA TTTTCAGGAC AGTCAGAGCT GCATGGAGAG
  ACTCTGTCTT TAAAAAAGGA AAGGGGGTAG GGAGAGAAAG AGAGAGAGAG AAAGAAAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGACTC ACCGTGCCAA
  Y
  ACAGGAATCC TTCACATCCA CCCACACAGA GTCAGCCACC ACCTCCCTCT GGCCACTAGC
  TCCAATCAGG GTGTAGTAAG CCACCAGGCG AAATGAAGGA ATAAACTCTG GAGTGATGGG
  CAGGGACAAG ACCACCAGGT CCTGGCCAGG CTCCCGAACC TGGCGGCCTG CCTTCAGGAG
  CTTCCCCTTG TTCATAACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62812208	NES17355723	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52547087					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62812208	NES17355723	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57529797 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	1525 bp proximal
Gm65552	predicted gene, 65552	1287 bp downstream
Tssr145377	transcription start site region 145377	566 bp downstream
Tssr145378	transcription start site region 145378	315 bp upstream
Tssr145379	transcription start site region 145379	396 bp upstream
Tssr145380	transcription start site region 145380	425 bp upstream
Tssr145381	transcription start site region 145381	491 bp upstream
Tssr145382	transcription start site region 145382	1021 bp upstream
Tssr145383	transcription start site region 145383	1137 bp upstream
Tssr145384	transcription start site region 145384	1270 bp upstream
Tssr148935	transcription start site region 148935	1745 bp upstream
Tssr148936	transcription start site region 148936	1724 bp upstream
Tssr148937	transcription start site region 148937	1703 bp upstream
Tssr148938	transcription start site region 148938	1397 bp upstream
Tssr148939	transcription start site region 148939	868 bp upstream
Tssr148940	transcription start site region 148940	524 bp upstream
Tssr148941	transcription start site region 148941	451 bp upstream
Tssr148942	transcription start site region 148942	34 bp downstream
Tssr148943	transcription start site region 148943	74 bp downstream
Tssr148944	transcription start site region 148944	94 bp downstream
Tssr148945	transcription start site region 148945	122 bp downstream
Tssr148946	transcription start site region 148946	147 bp downstream
Tssr148947	transcription start site region 148947	386 bp downstream
Tssr148948	transcription start site region 148948	438 bp downstream
Tssr148949	transcription start site region 148949	493 bp downstream
Tssr148950	transcription start site region 148950	1058 bp downstream
Tssr148951	transcription start site region 148951	1099 bp downstream
Tssr148952	transcription start site region 148952	1140 bp downstream
Tssr148953	transcription start site region 148953	1324 bp downstream
Tssr148954	transcription start site region 148954	1375 bp downstream
Tssr148955	transcription start site region 148955	1522 bp downstream
Tssr148956	transcription start site region 148956	1555 bp downstream