rs52547940 SNP Detail

Summary

• ID
  rs52547940
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14370692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGATTCCA GCCCAGAGTC
  TTGTTTATCA AGCAGTGTTT GGGGGTTCAT CATCTGGAGG CTAAAGCCCC ACAAAAGCCT
  TCTGTGTCTC TGTCTCTTTG TCTCGCCGTC TCTTTTTCCA TCTCGCTGTC TCTGTCTCTT
  GTTTCTGACG TTCCCTGTGT GTTTATCTCT GTTTCTGTGT GTGTATGTTC AAATTCTTCG
  C
  TAGTCAAAGA GATCTTTCAT TCTGATGTAT TAAAGCAGGA CTTTTTAGAG CCCTGTTACC
  TCTCCGACAG CCTTGCTTTG TAGGTCAGGA TTGTTGAAAG CATTTATTCT CACTTAGAGA
  AATGACTGTC TTTTTTTAAA AAATGCACTT TTTCTCCCAA TGGTAGGTAA CATCCTAAGT
  CCTATTGTAG AAACTTATGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138986237	ENSMUSSNP4183364	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52547940					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14370692 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6156	CpG island 6156			283 bp proximal
Pxk	PX domain containing serine/threonine kinase			Intron
				Noncoding-Transcript-Variant
Rr487874	regulatory region 487874			321 bp distal
Rr487875	regulatory region 487875			816 bp proximal
Tssr4245	transcription start site region 4245			518 bp downstream
Tssr124235	transcription start site region 124235			785 bp downstream