rs52549293 SNP Detail

Summary

• ID
  rs52549293
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180549804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGA GGCAGGTGGA TTTCTGAGTT
  C
  GAGGCCAGCC TGGACTACAG AGTAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146385509	ENSMUSSNP2743997	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs52549293					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180549804 () rs orientation: forward

Symbol	Name	Function Class
Gm8101	predicted gene 8101	148 bp downstream
Gm70653	predicted gene, 70653	1203 bp downstream
Rr424550	regulatory region 424550	1496 bp distal
Rr424551	regulatory region 424551	1696 bp distal
Rr424552	regulatory region 424552	210 bp proximal