rs52549445 SNP Detail

Summary

• ID
  rs52549445
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156261100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTT CCAGCTCAGT CTTCAAGCCT
  S
  TCGAGATCTT CTGGAAACTT ATTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320579279	CHEV_2_156244916	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52549445					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156261100 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	1175 bp proximal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	1729 bp upstream
Rr47255	regulatory region 47255	1500 bp distal
Rr55936	regulatory region 55936	700 bp proximal
Tssr21155	transcription start site region 21155	472 bp downstream
Tssr21156	transcription start site region 21156	1540 bp upstream
Tssr21157	transcription start site region 21157	1657 bp upstream
Tssr21158	transcription start site region 21158	1858 bp upstream
Tssr21159	transcription start site region 21159	1872 bp upstream
Tssr21160	transcription start site region 21160	1895 bp upstream
Tssr21161	transcription start site region 21161	1903 bp upstream
Tssr21162	transcription start site region 21162	1936 bp upstream
Tssr21163	transcription start site region 21163	1949 bp upstream
Tssr21164	transcription start site region 21164	1982 bp upstream