rs52550215 SNP Detail

Summary

• ID
  rs52550215
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14370706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGGCCAG CAAATCAGAT
  TCCAGCCCAG AGTCTTGTTT ATCAAGCAGT GTTTGGGGGT TCATCATCTG GAGGCTAAAG
  CCCCACAAAA GCCTTCTGTG TCTCTGTCTC TTTGTCTCGC CGTCTCTTTT TCCATCTCGC
  TGTCTCTGTC TCTTGTTTCT GACGTTCCCT GTGTGTTTAT CTCTGTTTCT GTGTGTGTAT
  G
  TTCAAATTCT TCGCTAGTCA AAGAGATCTT TCATTCTGAT GTATTAAAGC AGGACTTTTT
  AGAGCCCTGT TACCTCTCCG ACAGCCTTGC TTTGTAGGTC AGGATTGTTG AAAGCATTTA
  TTCTCACTTA GAGAAATGAC TGTCTTTTTT TAAAAAATGC ACTTTTTCTC CCAATGGTAG
  GTAACATCCT AAGTCCTATT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138986234	ENSMUSSNP4032889	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52550215					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14370706 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6156	CpG island 6156			269 bp proximal
Pxk	PX domain containing serine/threonine kinase			Intron
				Noncoding-Transcript-Variant
Rr487874	regulatory region 487874			335 bp distal
Rr487875	regulatory region 487875			802 bp proximal
Tssr4245	transcription start site region 4245			532 bp downstream
Tssr124235	transcription start site region 124235			771 bp downstream