rs52550536 SNP Detail

Summary

• ID
  rs52550536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46340534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTCTAC AAAGTGAGTT
  CCAGGACAGC CAGGGCTATA CAGAGAAACC CTGTCTGGAA AAGAAAGAAA GAAAGAAAGA
  AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA
  AAGAAAGAAA GAAAGAAAGA AAAAAAAATG TATCCCTGCC ATTCAGCCTA ACTTCCATTA
  Y
  ACCGCCAGTT CTAATGGCAG CAGAACAAGG AGGTCCTCTA CTCTGACTCC CCTGGAGTCG
  GCAATCTCTG CACTTCCTGG GTGCTTGATC TCTGGCTGTT GGATTCAAGA AAGCTCCAGA
  GGCATCATTT CACTAAACTC CAAATCCAAC CACATTCTTC CCCTGTTTAT GATTCTCCAG
  TATCCTCCAC ACAATCAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61787375	NES17721029	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52550536					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61787375	NES17721029	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46340534 () rs orientation: forward

Symbol	Name	Function Class
Gm10113	predicted gene 10113	within coordinates
Rr272082	regulatory region 272082	1667 bp proximal
Rr276190	regulatory region 276190	1267 bp proximal