rs52550817 SNP Detail

Summary

• ID
  rs52550817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44889253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTGTGTGTGT GTGTGTGTGT GTGTGTGTGC GCGCGCGCGC
  CTTTGGAGGC CAGAGGACAA CATTGGAAGC TGTTCATCTT TTTTTAAAAA AATTTTAACG
  R
  TGTGTGTGTG TGTGTATGTC TGCGCCACAT GGTGCTTATA GAGGGCAGAA GATAGATAAA
  TTTTCGGGAC TGGGCCTCTC CTGCCACAGG CTGTGCTCCA A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149131902	ENSMUSSNP1285179	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52550817					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44889253 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	714 bp upstream
Cpgi19038	CpG island 19038	741 bp proximal
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	1256 bp upstream
Tssr66503	transcription start site region 66503	1245 bp upstream
Tssr66504	transcription start site region 66504	1280 bp upstream
Tssr72351	transcription start site region 72351	1073 bp upstream
Tssr72352	transcription start site region 72352	965 bp upstream
Tssr72353	transcription start site region 72353	763 bp upstream
Tssr72354	transcription start site region 72354	726 bp upstream
Tssr72355	transcription start site region 72355	696 bp upstream
Tssr72356	transcription start site region 72356	542 bp upstream
Tssr72357	transcription start site region 72357	534 bp upstream
Tssr72358	transcription start site region 72358	509 bp upstream
Tssr72359	transcription start site region 72359	479 bp upstream
Tssr72360	transcription start site region 72360	442 bp upstream
Tssr72361	transcription start site region 72361	419 bp upstream