rs52551485 SNP Detail

Summary

• ID
  rs52551485
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54492397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTAGTTAC TTATATTTGG TCAGACTAAA CCCCCTCTTA
  CTCTTTTTGA AGTAAGAGTT ATAGTGTGTA AATGGAGAAT GTGAGTGTGG TGTGTGTGTG
  K
  GGGGGGGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGGGAGG
  GAGAGAGAGA GAGAGCGCTT GAGTGCTTGA GTGCTTCAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136506421	ENSMUSSNP534007	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52551485					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54492397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21767	CpG island 21767	1118 bp proximal
Idh3a	isocitrate dehydrogenase 3 (NAD+) alpha	1398 bp upstream
Rr401372	regulatory region 401372	1034 bp upstream
Rr679158	regulatory region 679158	996 bp distal
Rr679159	regulatory region 679159	731 bp proximal
Rr679160	regulatory region 679160	1409 bp proximal
Tssr85161	transcription start site region 85161	1337 bp upstream
Tssr85162	transcription start site region 85162	1915 bp upstream