rs52552232 SNP Detail

Summary

• ID
  rs52552232
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23590425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCA AAACACTCAT ACACATAAGT
  R
  AATAAAAACA TTTTTTTCAA AGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148055921	ENSMUSSNP6835497	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss321488661	CHEV_5_22891245	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52552232					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23590425 () rs orientation: forward

Symbol	Name	Function Class
4930580E04Rik	RIKEN cDNA 4930580E04 gene	1682 bp upstream
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15578	CpG island 15578	1506 bp proximal
Rr112206	regulatory region 112206	within coordinates
Rr124896	regulatory region 124896	975 bp proximal
Rr367795	regulatory region 367795	1458 bp upstream
Tssr45359	transcription start site region 45359	1834 bp upstream
Tssr45360	transcription start site region 45360	1846 bp upstream
Tssr45361	transcription start site region 45361	1873 bp upstream
Tssr50259	transcription start site region 50259	1048 bp downstream
Tssr50260	transcription start site region 50260	1458 bp downstream
Tssr50261	transcription start site region 50261	1557 bp downstream
Tssr50262	transcription start site region 50262	1606 bp downstream