rs52552343 SNP Detail

Summary

• ID
  rs52552343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81340607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAAGTAA ACTTGCTCCT
  TCTGGGATAA GACCAAGATG AAGAGATGAG CTTTTGGCAT CTGGCATTGA GGTTCCTGCA
  TGAAAACAGT GGCCAGCGGG TGCCTGGATC TACAACACCA CCTCTGCAGT CACAGTGAAG
  TCTGCCATCA GAAAACCGAA GTAACTGAAA GACCATAGAA GCCCTAACGT CTGAGACTCG
  Y
  CTAGCCCACA ATAAATGGGT TAATTTACAT AACAAAAAGG AAAGAAAGAG AGAGAGAGAG
  AGAGAAAGAG GGAAAGAAAG AAAGAAAGAA AGAAAGAAAG AAAGAAGGAA GGAAGGAAGG
  AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGGAAGAAAG
  GAAGGAAAGG AAAGAAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292372	NES16908613	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52552343					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292372	NES16908613	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81340607 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1995	CpG island 1995	1317 bp distal
Gm16106	predicted gene 16106	7 bp downstream
Gm56270	predicted gene, 56270	55 bp downstream
Gna15	guanine nucleotide binding protein, alpha 15	within coordinates
Rr216884	regulatory region 216884	1407 bp distal
Rr223625	regulatory region 223625	278 bp proximal
Rr225303	regulatory region 225303	1406 bp distal