rs52552840 SNP Detail

Summary

• ID
  rs52552840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80711722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGG GGTGTTTGTT CCTAAGGCAA
  R
  AATGCATAAC ATATGTATAA TATAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320812642	CHEV_3_80608337	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52552840					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80711722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13281	CpG island 13281	1247 bp distal
Gm66511	predicted gene, 66511	within coordinates
Gria2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	1580 bp upstream
Rr578666	regulatory region 578666	1090 bp distal
Rr578667	regulatory region 578667	1037 bp proximal
Rr578668	regulatory region 578668	1118 bp proximal
Tssr33765	transcription start site region 33765	1814 bp upstream
Tssr33766	transcription start site region 33766	1798 bp upstream
Tssr33767	transcription start site region 33767	1771 bp upstream
Tssr33768	transcription start site region 33768	1743 bp upstream
Tssr33769	transcription start site region 33769	1685 bp upstream
Tssr33770	transcription start site region 33770	1645 bp upstream
Tssr33771	transcription start site region 33771	1575 bp upstream