rs52553687 SNP Detail

Summary

• ID
  rs52553687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41493318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGTTTGC TGCATTTTAC
  TCACGAGTCT GCAACCGAAA TTGCCTGTCA TTTTTATTTT ATTTTTGCTT TGTTTTGTCT
  CAAGAAAGAA TGAAGGAATC GTGTTGCGCT CCCCTCAGTC CCTGAGACCC TAACTTGTGA
  TGTTTACCGT TTAAATCCAC GGGTTAGGCT CTTGGGAGCT GCGGGTCGTG CCTTTGCATC
  R
  CTGAAGGAAC TTTTTGTCTT TTAAGGAAGA GAGAGACAGA GAGACAGAGA GACACAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAAA AGTTTGTCAG AAGTGATGGT AATACACCCT TGAGGCTTCC ATTGTTAGAT
  GGGATCAGGT GACCCGAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61386152	NES16764724	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52553687					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386152	NES16764724	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41493318 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	within coordinates
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	20 bp downstream
Rr677062	regulatory region 677062	671 bp distal
Rr677063	regulatory region 677063	557 bp distal
Rr677064	regulatory region 677064	409 bp distal
Rr677065	regulatory region 677065	10 bp distal
Rr677066	regulatory region 677066	within coordinates
Rr677067	regulatory region 677067	118 bp proximal
Rr677068	regulatory region 677068	845 bp proximal
Tssr84518	transcription start site region 84518	1305 bp downstream
Tssr84519	transcription start site region 84519	1270 bp downstream
Tssr84520	transcription start site region 84520	1100 bp downstream
Tssr84521	transcription start site region 84521	1055 bp downstream
Tssr84522	transcription start site region 84522	1018 bp downstream
Tssr84523	transcription start site region 84523	922 bp downstream
Tssr84524	transcription start site region 84524	762 bp downstream
Tssr84525	transcription start site region 84525	706 bp downstream
Tssr84526	transcription start site region 84526	671 bp downstream
Tssr84527	transcription start site region 84527	18 bp downstream
Tssr84528	transcription start site region 84528	1002 bp upstream
Tssr88997	transcription start site region 88997	1214 bp upstream