rs52554830 SNP Detail

Summary

• ID
  rs52554830
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110666165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTTCATA GACAGAAAAA
  TAAACTGAAA CAAAAAAAAA AGTTAAAATG AACCATGCTT AAGACCCAAG CATCGGGACT
  GGAGAGATGG CTCAGTGGTT AAGAGCACTG ACTGCTCTTC TGAAGGTCCT GAGTTCAATT
  CCCAGAAACC ACATGATGGC TCACAACCAT CCATAATAAG ATCTGACGCC CTCGTCTGGT
  S
  TGTCTGAAGA CAGCTACAGT GTACTTACAT ATAATAAATA AATCTTAAAA CATAAATAAA
  AAATAAAAAA GACCCAAGCA TCATGCAGGA GAGTTCCATT CTCAGCACCC ATGTAGCAGC
  TCACAGCTGT CTGTAACTTC AGTTTTAGGG AATTCACACC CTCACACAGA CCTACATTCA
  GGCTAAACAC TAATTGCACG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss138692770	ENSMUSSNP4832870	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52554830					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110666165 () rs orientation: forward

Symbol	Name	Function Class
Gm60092	predicted gene, 60092	153 bp downstream
Rr472970	regulatory region 472970	656 bp distal
Rr472971	regulatory region 472971	228 bp distal
Rr472972	regulatory region 472972	within coordinates
Rr472973	regulatory region 472973	937 bp proximal
Tssr115233	transcription start site region 115233	627 bp downstream