rs52555444 SNP Detail

Summary

• ID
  rs52555444
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96678366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTCTCT CTGCCTTCTC
  CTCACATGGC TTAAAGGCAT CCAGAACGGG TGGGTTGTCG CCTGGTTTTG GAGGCTTGAC
  CCAAGTATTT TTTCAGGAAG AATCGGTCTC TTTTGACTAA TTTTTATATA ACATTGTGAA
  ACTAACCCTC TTTTTCTTTT GTCTTAGTTT TTTGAACAGA AAAGTTGTCA CTGTTTCGGG
  K
  TTTTTTTGAT TTTTGGTTTG TTTGTTTGTT TTTTTTTTTA AGACAAGCTC TCACTCTGTA
  ACCTAGGCTA CATAGTCTAA ACTGCGCTTT TTTTTTTTTT TTTTTTTTTG GGTTTGCTGT
  TGTGTTTGTT TGTTTGTTTG AGACAGGGTT TCTCTGTGTA GCCCTGGCTC TCCTGGAACT
  CACTCTGTAG AACAGGCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132687331	ENSMUSSNP6046844	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52555444					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96678366 () rs orientation: forward

Symbol	Name	Function Class
Cbx1	chromobox 1	1587 bp upstream
Cpgi3668	CpG island 3668	1300 bp proximal
Rr455507	regulatory region 455507	1996 bp distal
Rr455508	regulatory region 455508	1167 bp proximal
Rr455509	regulatory region 455509	1720 bp proximal
Tssr104569	transcription start site region 104569	1578 bp upstream
Tssr104570	transcription start site region 104570	1609 bp upstream
Tssr104571	transcription start site region 104571	1673 bp upstream
Tssr104572	transcription start site region 104572	1695 bp upstream
Tssr110346	transcription start site region 110346	1448 bp downstream