rs52555966 SNP Detail

Summary

• ID
  rs52555966
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:155091481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTCAGCTC CCTGTGTGTG CGCTGACATC TGACTCACCC
  TAGGTCCAGA CTGGGGGAGG CCCACGCTGA TCCCGATCAC ACATGTTTTC TACCCCCCTG
  S
  CCCCGTCCAT TCTCTGCTTC CCCCACCCCC CTTACCCCGA CAGGAAGTTC AGATCACACT
  AGCTGCAGTT CAGCAGATTA TAGCCCCTGC TCACCATCT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145777586	ENSMUSSNP4917133	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52555966					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155091481 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC034090	cDNA sequence BC034090			Intron
				Noncoding-Transcript-Variant
Rr420974	regulatory region 420974			1689 bp distal
Rr420975	regulatory region 420975			within coordinates
Rr420976	regulatory region 420976			163 bp distal