rs52556427 SNP Detail

Summary

• ID
  rs52556427
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44889129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCACTTGA GCATACCTAG
  CATCTTCAAA GTTTCCTATG ATGTGCCCAG AAAGAAGTCC CTGACACTTG TCAAGTCCCC
  AGTTCCTCAC AGATTTCTAA TGTGGGAAGT TCCTATCACC TATCTACCCA AAGCCTAGTT
  CTCTGGGACA GCAGCTGCCT TCTGAGACAT GTCTCATCTA TTTTCTTTCT GTATGTGTAT
  W
  TGTATGTGTT AGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGCGCGCGCG
  CGCCTTTGGA GGCCAGAGGA CAACATTGGA AGCTGTTCAT CTTTTTTTAA AAAAATTTTA
  ACGATGTGTG TGTGTGTGTA TGTCTGCGCC ACATGGTGCT TATAGAGGGC AGAAGATAGA
  TAAATTTTCG GGACTGGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149131886	ENSMUSSNP5669000	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52556427					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44889129 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	590 bp upstream
Cpgi19038	CpG island 19038	865 bp proximal
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	1380 bp upstream
Tssr66503	transcription start site region 66503	1369 bp upstream
Tssr66504	transcription start site region 66504	1404 bp upstream
Tssr72351	transcription start site region 72351	949 bp upstream
Tssr72352	transcription start site region 72352	841 bp upstream
Tssr72353	transcription start site region 72353	639 bp upstream
Tssr72354	transcription start site region 72354	602 bp upstream
Tssr72355	transcription start site region 72355	572 bp upstream
Tssr72356	transcription start site region 72356	418 bp upstream
Tssr72357	transcription start site region 72357	410 bp upstream
Tssr72358	transcription start site region 72358	385 bp upstream
Tssr72359	transcription start site region 72359	355 bp upstream
Tssr72360	transcription start site region 72360	318 bp upstream
Tssr72361	transcription start site region 72361	295 bp upstream