rs52556999 SNP Detail

Summary

• ID
  rs52556999
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99759841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCAGCTGG AGCCCCTACT TTCTGAGAAA ACTTTCACCT
  CTACCTGGGG AGGCTACCTT CCTATTGTAA AGCAGATACA CAACATTTGA ATTCCTCCAA
  W
  GGTGGCCCTT CACTCTCAGC TTCTCTCCTT TCTACCTCTC TCCTTCCCTC CCGTCCCCTT
  CTCTCTCCTC ACCTCTCCCT TCTCTTCTTT CCGCTCCCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136852144	ENSMUSSNP2004767	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323137468	CHEV_9_99778207	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52556999					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99759841 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	1318 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	1064 bp downstream
Rr685464	regulatory region 685464	1629 bp distal
Rr685465	regulatory region 685465	1128 bp distal
Rr685466	regulatory region 685466	within coordinates
Sox14	SRY (sex determining region Y)-box 14	1618 bp upstream
Tssr91083	transcription start site region 91083	1595 bp upstream
Tssr91084	transcription start site region 91084	1576 bp upstream