rs52558559 SNP Detail

Summary

• ID
  rs52558559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171978126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccctggaac tgaaggtata ggtagctgtg
  agctgccatg tgggtgctgt gaactgaatc tgggtcctct gcaagaacag ccagtactct
  aaaacagtga accatttctt tctttctttc tttctttctt tctttctttc tttctttctt
  Y
  ctttctttct ttctttcttt tttcaaagat ttatttcatt tatatgggta cactgtagct
  gtcttcacac accagaagag ggcactggat cccattacag atggtcgtga gccaccatgt
  ggttgctggg aattgaactc aggacctctg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120006884	PARCsnp_1.17520	PARC_SEQ	INBRED	f	SNP	T	C
ss120009754	PARCsnp_1.07144	PARC_SEQ	INBRED	f	SNP	T	C
ss320122961	CHEV_1_174080690	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs52558559					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171978126 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1037	CpG island 1037			1654 bp distal
Dcaf8	DDB1 and CUL4 associated factor 8			Intron
				Noncoding-Transcript-Variant
Rr372457	regulatory region 372457			807 bp downstream
Rr423471	regulatory region 423471			710 bp distal
Rr423472	regulatory region 423472			426 bp distal