rs52558911 SNP Detail

Summary

• ID
  rs52558911
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:92275664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTGTGGC CTTTTCTCTC
  CTTTTAAATA TACGTAGACT AGAATTCATT CCTCTCTGGA GTCCTGTACC AGCAAATTGC
  AAGGTCGAGA TGAACCAGCT GTGCAAACAC TCCCCCTAGT GATGAACGGC AGACTTCCAA
  AACCCGAGGT TTATCGCTCG CCGTCCCGTT CATTTCTTTA ACATCGGGCG TGCGCACACA
  K
  GCCTTCAGAG AAGCTGGGAG AAGGAAGGAG GAAAGGAGAA GGAGTTGAAA GGAGAAGGGA
  AGTTTGGATG AAGAGGATGT CGATTGGCTT GGAGAATGGT GGGGTCCAGA GCGCTACTTG
  CTCCGCCACG AGGTTCTGTC CACTCGCCCT GCTGGAGTCC CCAAGAGGTG ATGCTATGGA
  TGCGCTCATG AGGTGAGTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60508515	NES16520084	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52558911					SNP	T	T	T	T	T	T	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60508515	NES16520084	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:92275664 () rs orientation: forward

Symbol	Name	Function Class
2410124H12Rik	RIKEN cDNA 2410124H12 gene	within coordinates
Cpgi8471	CpG island 8471	within coordinates
Rr319727	regulatory region 319727	64 bp distal
Rr325587	regulatory region 325587	within coordinates