rs52558939 SNP Detail

Summary

• ID
  rs52558939
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185415962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctttgaatt tgaggccact atgggctata
  cagtgagttc cagattagcc tgggccacag aatgagacct tAAGAAACCA TGATGATAAT
  ATGTGCATGG TTTTacacac acacacacac accacacaca caccacacac acacacacaG
  W
  TTTTGAGGAA GACTGAGGCC TCTGGAATTG TGGAACTAAG AACCTACCTT CTCATTCAAA
  AACTTTTTCT GTTCTTCACG TATGTTTTCC TCCCTCGCCC TTCTCATTTC TTTCCCCACA
  ATTACCAAAG TCTCTTCTTA CAATTCCTGC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146440044	ENSMUSSNP3798833	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320178620	CHEV_1_187507644	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52558939					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185415962 () rs orientation: forward

Symbol	Name	Function Class
Rr425420	regulatory region 425420	1205 bp distal
Rr425421	regulatory region 425421	1657 bp distal
Rr425422	regulatory region 425422	1033 bp proximal
Rr425423	regulatory region 425423	1221 bp proximal