rs52560133 SNP Detail

Summary

• ID
  rs52560133
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67472731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGTCGCTG GGTGCCGAGA TGGATTCGGT CAGGTCCTGG
  GTCCGGAATG TCGGCGTGGT GGACGCCAAT GTCGCGGCTC AGAGGTAATG AGACTGGAGC
  S
  GTTGTGCTCT GAAAGTCTCT GGTTGTGTCT GTCTCCCCGA ATATCTCTTC CCTTTGCTCC
  CTCTCTTTCT CTCTGTCCTT GTCTCTCCTC CCTGGCTGTG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss62435898	NES17250942	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs52560133					SNP	C	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62435898	NES17250942	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67472731 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6658	CpG island 6658	1429 bp distal
Cpgi6659	CpG island 6659	587 bp distal
Cpgi6660	CpG island 6660	within coordinates
Ebf2	early B cell factor 2	within coordinates
Rr297418	regulatory region 297418	within coordinates
Tssr126328	transcription start site region 126328	1936 bp downstream
Tssr126329	transcription start site region 126329	1826 bp downstream
Tssr126330	transcription start site region 126330	1372 bp downstream
Tssr126331	transcription start site region 126331	665 bp downstream
Tssr126332	transcription start site region 126332	637 bp downstream
Tssr126333	transcription start site region 126333	546 bp downstream
Tssr126334	transcription start site region 126334	445 bp downstream
Tssr126335	transcription start site region 126335	417 bp downstream