rs52561702 SNP Detail

Summary

• ID
  rs52561702
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84013468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC TCCTATCTCC CTCTACCCTC
  M
  TTTCTCCTCT CTTGTTCTAT TGAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144834681	ENSMUSSNP1898602	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss319823834	CHEV_1_84032322	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52561702					SNP	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84013468 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	546 bp downstream
Tssr12546	transcription start site region 12546	940 bp downstream
Tssr12547	transcription start site region 12547	1526 bp downstream
Tssr12548	transcription start site region 12548	1692 bp downstream
Tssr12549	transcription start site region 12549	1717 bp downstream