rs52561711 SNP Detail

Summary

• ID
  rs52561711
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:146439648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCACATAA GAAATGCAAA CCTTTGCTTA
  GAAGGGAAGC AATTAGCTTA GGGTTCTGTG TTCAGTCAAA GCAGAAAGTG GGCCCCTCCC
  CCATGCGACC TGATTATATC CTAAATAATT TCTATTtgtg tgtgtgtgtg tgtgtgtgtg
  W
  gagagagaga gagagagaga gagagagaga gagagagaga gagagagaga gagagagaga
  aagagGTTAG TAACTCAATG GTCTATTCTC ATTTGGAAAC CCAGTGTTCC ATAGTCAGAG
  TTTCCTAGCT TATTTGAATA CAAACAGAAC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133993883	ENSMUSSNP3567982	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322080827	CHEV_6_146486672	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52561711					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:146439648 () rs orientation: forward

Symbol	Name	Function Class
Rr134091	regulatory region 134091	953 bp proximal
Rr139420	regulatory region 139420	within coordinates
Rr400056	regulatory region 400056	85 bp upstream