rs52561746 SNP Detail

Summary

• ID
  rs52561746
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113367771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGT GAATGGTGAT TTCTTCATAC
  W
  TGTCTATGAC TATTCTTAAT TTAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss145682798	ENSMUSSNP974112	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322424346	CHEV_7_120912048	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52561746					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113367771 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	1511 bp distal
Rr653860	regulatory region 653860	583 bp distal
Rr653861	regulatory region 653861	118 bp proximal
Rr653862	regulatory region 653862	741 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	within coordinates