rs52561798 SNP Detail

Summary

• ID
  rs52561798
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153725576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGTGCAGTTC ACCAGGGTCT GATGTTCAGT CAGACAAATC
  ACAAAGTGGT CAGAGGAACA AACCAGGAAC AGTCCTGAAC TTCACACAGA AAAACAAAAC
  M
  AAACAAAACA AACAAAACAA AACAAAAAAA CCAACCCACC ACCACCAACA ACAAAACAGC
  CTGGATTCAG AATAAGCATC ATAGAAGTCA AGGACAAGAA A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145750756	ENSMUSSNP5475702	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52561798					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153725576 () rs orientation: forward

Symbol	Name	Function Class
Teddm2	transmembrane epididymal family member 2	within coordinates
Tssr14286	transcription start site region 14286	914 bp downstream
Tssr14287	transcription start site region 14287	1206 bp downstream
Tssr14288	transcription start site region 14288	1218 bp downstream
Tssr14289	transcription start site region 14289	1253 bp downstream
Tssr14290	transcription start site region 14290	1337 bp downstream
Tssr14291	transcription start site region 14291	1359 bp downstream