rs52562239 SNP Detail

Summary

• ID
  rs52562239
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:95901199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAATGCTT AGCTTGGGCT GATTCCTGGA GCATTTCAAA
  GTATGCACAT ATACACATAT AAATATTTAA GATATATATG CATACATGTA CATAATTACA
  T
  ATACACACAC ACACACACAC ACACACACAC ACACACACAA TGCAATATCA AGGAAAAACA
  AGAGAACCGT GTAAGAGAGG CTCTGTATCT ACTACTACA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144993747	ENSMUSSNP6961225	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324489719	CHEV_13_96534646	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52562239					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95901199 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32702	predicted gene, 32702			397 bp upstream
Iqgap2	IQ motif containing GTPase activating protein 2			Intron
				Noncoding-Transcript-Variant
Rr484141	regulatory region 484141			332 bp distal
Rr484142	regulatory region 484142			within coordinates
Rr484143	regulatory region 484143			411 bp proximal
Tssr120725	transcription start site region 120725			430 bp upstream
Tssr120726	transcription start site region 120726			634 bp upstream