rs52564191 SNP Detail

Summary

• ID
  rs52564191
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135757289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTTCAGCTTG GGCCCTGTCT GCCTGAGATG AAGTCAAGGG
  AAGGAAGGGG ACAGAAGATG GAGAGGGAAG AGAGAGGAGC CAAGACGCTA GAAGGAGAAC
  K
  TGGGCACATA ACCAGGCCAG CCTTGCGCTG TCCTGCGGCT GACCGATGGC CATAAGCGCA
  CTGGTGATTC GAGGCATATG ACGGAGTGAT TATACCACTC C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144510681	ENSMUSSNP1857382	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52564191					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135757289 () rs orientation: forward

Symbol	Name	Function Class
Por	cytochrome p450 oxidoreductase	within coordinates
Rr124528	regulatory region 124528	888 bp distal
Tssr49178	transcription start site region 49178	221 bp upstream
Tssr49179	transcription start site region 49179	1858 bp upstream