rs52564276 SNP Detail

Summary

• ID
  rs52564276
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40641672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA GAGAAACCCT GTCTCGAAAA
  M
  AAAAACAAAA ACAAAAAACC CCAAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136336756	ENSMUSSNP2734765	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322918970	CHEV_9_40538459	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52564276					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40641672 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21598	CpG island 21598	340 bp proximal
Gm68229	predicted gene, 68229	within coordinates
Gm68234	predicted gene, 68234	571 bp upstream
Rr1916	regulatory region 1916	within coordinates
Rr676903	regulatory region 676903	81 bp proximal
Rr676904	regulatory region 676904	582 bp proximal
Rr676905	regulatory region 676905	1216 bp proximal
Rr676906	regulatory region 676906	1977 bp proximal
Tssr84462	transcription start site region 84462	578 bp upstream
Tssr84463	transcription start site region 84463	627 bp upstream