rs52565155 SNP Detail

Summary

• ID
  rs52565155
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134101386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAT TTATTTTTAT TTGGTGTGTA
  A
  GAGTGTTTGC CTCTGTGTGT GTGTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147527523	ENSMUSSNP2991945	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321347237	CHEV_4_133929990	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52565155					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134101386 () rs orientation: forward

Symbol	Name	Function Class
Extl1	exostosin-like glycosyltransferase 1	1493 bp upstream
Rr601652	regulatory region 601652	1192 bp distal
Rr601653	regulatory region 601653	116 bp proximal
Tssr43896	transcription start site region 43896	1514 bp upstream
Tssr43897	transcription start site region 43897	1486 bp upstream