rs52565613 SNP Detail

Summary

• ID
  rs52565613
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29978912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGAAGGAA CAGGAAAGAA ATCAGGAACA GAAAAAGGAA
  GGAAGACCAA GAAATGTTAC GCAAATAAGC CAGGCAAGTA CTCCGGAGGC AGAAAGGTAG
  W
  TCTCAGAGCT CACAGCCAGC CTGCTGGTCT ACAGAATGAA TTCAGTCACA AAGAAATCCT
  GTCTCAAAAG GAAAAAACAA ACAACAAAAA CAAAAAACA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60991483	NES16140565	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	A	A	T	A	A		A	A	A	A		A
ss322132936	CHEV_7_31064506	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52565613					SNP	A	T	T	T	T	A	A	T	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991483	NES16140565	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29978912 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	1546 bp upstream
Cpgi18786	CpG island 18786	249 bp proximal
Gm71678	predicted gene, 71678	1656 bp downstream
Rr400235	regulatory region 400235	779 bp upstream
Rr644765	regulatory region 644765	117 bp proximal
Rr644766	regulatory region 644766	556 bp proximal
Rr644767	regulatory region 644767	922 bp proximal
Rr644768	regulatory region 644768	1411 bp proximal
Tssr65667	transcription start site region 65667	600 bp upstream
Tssr65668	transcription start site region 65668	699 bp upstream
Tssr65669	transcription start site region 65669	1047 bp upstream
Tssr71721	transcription start site region 71721	848 bp downstream
Wdr62	WD repeat domain 62	within coordinates