rs52565732 SNP Detail

Summary

• ID
  rs52565732
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81340816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATAAATGG GTTAATTTAC
  ATAACAAAAA GGAAAGAAAG AGAGAGAGAG AGAGAGAAAG AGGGAAAGAA AGAAAGAAAG
  AAAGAAAGAA AGAAAGAAGG AAGGAAGGAA GGAAAGAAAG AAAGAAAGAA AGAAAGAAAG
  AAAGAAAGAA AGAAAGAAAG AAAGGAAGAA AGGAAGGAAA GGAAAGAAAA AGAAAAAATT
  R
  TCAGAGAACA CAAAACACGG GAGGAAATGT CAGCGGTAAA TAAGGTTTTT GGATCTGTCC
  ATGGTGTTTG AATGAGCGCT GTCCCCACAG GCTGGTGTGT TGATGCTTGG TCCCCAGTTT
  GTGGACCTGT TTGGAGAGGA TGAGGAGGTA TGGCCTTCTT GGAGGAGGTG TGGCCTGGTT
  GTAAATGTGT GGCTCTATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292371	NES16908598	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52565732					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292371	NES16908598	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81340816 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1995	CpG island 1995	1526 bp distal
Gm16106	predicted gene 16106	216 bp downstream
Gm56270	predicted gene, 56270	264 bp downstream
Gna15	guanine nucleotide binding protein, alpha 15	within coordinates
Rr216884	regulatory region 216884	1616 bp distal
Rr223625	regulatory region 223625	69 bp proximal
Rr225303	regulatory region 225303	1615 bp distal