rs52565880 SNP Detail

Summary

• ID
  rs52565880
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:181001679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GAGAGGGTAC TTTACATGTG CACAAGACAT TCAGTAAAAA
  TGACAACCTA AAAGTTGTTT CTAGAATATT TTAGGAATCA AGTTCTTTCT CAAACACTCA
  M
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACAAAACA CACACACACA
  CACTCTTTTA ACTTCATTAA ATCCAGGCAA TCTGGATTAA G                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146392238	ENSMUSSNP2995277	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52565880					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181001679 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tssr15573	transcription start site region 15573			441 bp downstream
Wdr26	WD repeat domain 26			mRNA-UTR
				Noncoding-Transcript-Variant