rs52567036 SNP Detail

Summary

• ID
  rs52567036
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:82949947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTATGAAA TCATACTTGA
  GAAGGGTGAG AAGAAGGACA ATAATATCGG TTAGAAATGT GTATCTATAG CCAGGTGGTA
  GTGGTGCACA CCTTTAATCC CAGCACTCAG GAGGCAGAAG CAGGCAGATA TCTGAGTTTG
  AGGCCATCTT GGTCTACAAA GTGAGTTCCA GGATAGCCAG AGCTACGCAG AGAAGCCCTG
  Y
  CTCAAAAAAA AAAAAAGAAA GAAAGAAAGA GAGAGAGAGA GAGAGAGAGA GAGAGAAGAA
  AGAAAGAAAG AAAAAGGAAG AAAGAAAGGA AGGAAGGAAG AATTCTTCTG ACTCCACCTT
  CCAGGTGCTG GGATAGTAGT CATGTGACAC AATGCCTGGC TCAAAATTAT TATTTTAGCA
  TGATTAAACT ACCTGTAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss133345833	ENSMUSSNP2821216	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss321843765	CHEV_6_82922960	CHEVERUD	SCREENING_POP	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs52567036					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82949947 () rs orientation: forward

Symbol	Name	Function Class
M1ap	meiosis 1 associated protein	within coordinates
Rr632713	regulatory region 632713	1498 bp distal
Rr632714	regulatory region 632714	1764 bp distal