rs52568338 SNP Detail

Summary

• ID
  rs52568338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5682289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT GTGTGTGTGT GTGTGTGTCT
  R
  TGTGTCTGTG TGCCTATCTG TGTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146274586	ENSMUSSNP2960125	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320209631	CHEV_2_5598524	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52568338					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5682289 () rs orientation: forward

Symbol	Name	Function Class
Camk1d	calcium/calmodulin-dependent protein kinase ID	within coordinates
Rr56860	regulatory region 56860	1088 bp distal
Rr64168	regulatory region 64168	1722 bp proximal
Rr372713	regulatory region 372713	489 bp downstream
Tssr22416	transcription start site region 22416	1453 bp upstream
Tssr22417	transcription start site region 22417	1413 bp upstream
Tssr22418	transcription start site region 22418	509 bp upstream
Tssr22419	transcription start site region 22419	485 bp upstream
Tssr22420	transcription start site region 22420	55 bp downstream