rs52568853 SNP Detail

Summary

• ID
  rs52568853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116208730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTGTCTC AGAAAACCAA
  AAAGAAAGCA TGGAGCCCTG TAAGGGCTGA GTGTAGACTG GTGTTAGAGT TCTTACCTAA
  CATGCATGAG ATTCTGGGTT TGATTTCCTG GTACTGCAAG AGGAAGAGGA AGAAAGAAGG
  AAAAGGGAAG AGGAGGAGAA TTGACTGTAA ATGTATATCA GTAAGTGCAC AGCCTCATAA
  Y
  GCATACCACA GAATAACACT GTGTCCACGG GTGCATACAT AGTCAAATAA ACACCTACAA
  TGTATGTGTT CAGGCCAGAA GATGTAAAAA GCAAAAATGC TGCTGGGCAA AATATGCCTG
  CCATGCAAGA GTGGCATGAA GGCTATGGGT TAACCAGCTG CTTTTGGATT AGACTTGAGG
  CCTGCTCCAC AGGAATGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60437325	NES15944699	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52568853					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437325	NES15944699	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116208730 () rs orientation: forward

Symbol	Name	Function Class
Cdc14a	CDC14 cell division cycle 14A	within coordinates
Rr70202	regulatory region 70202	1530 bp distal
Rr78757	regulatory region 78757	37 bp distal