rs52569054 SNP Detail

Summary

• ID
  rs52569054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81113755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATGTGCA TTTTTTATGT
  ACAAATACAT AAACATGTAC ATATGCTAAA GTCAAAATAA TCTATCATCT ATCTGTCTGT
  CTGTCTGTCT GTCTGTCTGT CTATCTATCT ATCTATCTAT CTATCTATCT ATCTATCTAT
  CTATCTAACT ATCATCCATC TACCTATATG CAAACAAACC CATTCACTTG ATTCTCTGGA
  R
  AGCCTTATTG CAGGCTCTTA AAAATATGCA GTAAAAACAA ATTTCCACAG ATCCATTTTA
  TCCCTCTTGC CCCTAAGGCT GAGACCATCA CAAAGTGAGT GGGGAGAATG TAAAAGCCAG
  AAATTGAGGC ACGCGGGAAA GAAGCAGTGT CTTCCGGAAT GGCAGGATTG CTACACTCAT
  GATGCCAGCT TTGTTACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss62937166	NES17409715	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	A	A	A	A	G	A	G	A
ss146076301	ENSMUSSNP1745987	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs52569054					SNP	A	A	G	G	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62937166	NES17409715	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81113755 () rs orientation: forward

Symbol	Name	Function Class
Gm33596	predicted gene, 33596	905 bp downstream
Rr393005	regulatory region 393005	1016 bp downstream
Rr393006	regulatory region 393006	1250 bp upstream
Rr531544	regulatory region 531544	1758 bp proximal