rs52569646 SNP Detail

Summary

• ID
  rs52569646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54570390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTTTATTATA ATTTGGGAGA AAAACAACAT GGCAGGTAAG
  GTTAAAAAAT ATATATAATA TTATATACAT ATATGTATAT ATATAAATAT GTATATGTGT
  R
  TGTGTATATA TATATATATA TATATGTGTG TGTGTGTGTG TGTGTGTGTG TGTCTGTGTG
  TCTGTGTGTC TGTGTGTCTG TGTGTGTATC CTGACATCTG C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136506932	ENSMUSSNP6272149	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52569646					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54570390 () rs orientation: forward

Symbol	Name	Function Class
Acsbg1	acyl-CoA synthetase bubblegum family member 1	1236 bp upstream
Gm39341	predicted gene, 39341	1242 bp downstream
Rr204171	regulatory region 204171	1201 bp proximal
Rr206444	regulatory region 206444	1189 bp distal
Tssr89653	transcription start site region 89653	1390 bp upstream
Tssr89654	transcription start site region 89654	1251 bp upstream
Tssr89655	transcription start site region 89655	1194 bp upstream