rs52569658 SNP Detail

Summary

• ID
  rs52569658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113305055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGT CCTTAAAAAT GTCCAGCATG
  Y
  AGCTTTTAGC CCTCCAGCCT TAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145681346	ENSMUSSNP4003993	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52569658					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113305055 () rs orientation: forward

Symbol	Name	Function Class
Gm5600	predicted gene 5600	276 bp downstream
Gm71809	predicted gene, 71809	within coordinates
Rr152955	regulatory region 152955	146 bp proximal
Rr163207	regulatory region 163207	1832 bp proximal
Rr168678	regulatory region 168678	1655 bp distal