rs52570451 SNP Detail

Summary

• ID
  rs52570451
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54688368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCATCC TGAAAACTTT
  TTTCCCAGGT AATCAGAATT TTCCTCAAAT TTTTTTCTTT AGTTTCTCTA TTCAAAATTG
  GAGTGTGTGT GTGTGTGTCT GTGTGTGTAT GTATGTCTGT GTGTGTGTGT GTGTGTCTGT
  ATGTCTGTGT GTGTATGTAT GTCTGTGTGT GTGTGTGTGT GTGTCTGTGT GTCTGTGTGT
  S
  TGTGTGTGTG TATGTGTGTG TGTGTGTGTG TGTGTGTGTG TAGACAGGAT CTGGAGACAT
  AGCTCAGGAT GGCCTCTAAC TGAAGATCCT CCCTGAGGTG CAGAAGTACA GGGATTACAG
  AATTCTACCA TCCAAGGCGG TGGCTGCTGC TGCTGCTGCT GCTGCTGCTG CTCCTCCTCC
  TCCTCCTCCT CCTCCTCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss175564817	SC_MOUSE_GENOMES_NOD-Mrktac_58966	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G	C	C	C	C	G	G	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs52570451					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G	C	C	C	C	G	G	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss175564817	SC_MOUSE_GENOMES_NOD-Mrktac_58966	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54688368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6457	CpG island 6457	1367 bp distal
Gm24424	predicted gene, 24424	847 bp upstream
Rr289213	regulatory region 289213	1968 bp distal
Rr289214	regulatory region 289214	1168 bp distal
Rr297196	regulatory region 297196	1367 bp distal
Rr389675	regulatory region 389675	1235 bp upstream
Rr404097	regulatory region 404097	1537 bp downstream