rs52571280 SNP Detail

Summary

• ID
  rs52571280
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69341117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTTCTGCCTG GACTGCAGCA GAAAGTCTCA CTAGCTACAG
  TCTTGTGCTG GAGTTCCAGG CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTAT
  M
  TATATATATA TATATATATA TATATATATA TATTCTCTAA AGTGGAAATG GCTTGTAACA
  GCATCTTTTC TTGGCCAGAA GATGCAATTG TTATCTCTGA G                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137856816	ENSMUSSNP630536	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52571280					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69341117 () rs orientation: forward

Symbol	Name	Function Class
Rr467019	regulatory region 467019	within coordinates
Rr467020	regulatory region 467020	1889 bp proximal
Tssr113629	transcription start site region 113629	1639 bp upstream