rs52572104 SNP Detail

Summary

• ID
  rs52572104
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30214303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCCACCCA CCCCAGTGTC TTGATTCTTA GCACCCACAG
  GGTAGATCAC ACGCCCCTTT AACTCCAGTT CCTCTCTTTT GTCTATCGTG GACTTTAGGA
  R
  CCCGTGTGCT GCGCTTACAT ACATACAAGC AAAATATTCA TACACATAAT TAATATAAAT
  AATAAATAAA AACTAAGAGA TTCTGGCTGG CCTGAAGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148681214	ENSMUSSNP4407932	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs52572104					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30214303 () rs orientation: forward

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	244 bp upstream
Prodh2	proline dehydrogenase (oxidase) 2	1476 bp downstream
Tssr2186	transcription start site region 2186	351 bp upstream
Tssr65778	transcription start site region 65778	267 bp upstream