rs52575645 SNP Detail

Summary

• ID
  rs52575645
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35290891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTATGTTA TTGCAGATTG
  AGTGGAAACT CAAGGCCTTC CGCAGGGAAG CTAGCTCCTC GTCCTTGATG GAGATCTCCA
  GGTCTGGGCT GATCTCAATT TCAGCTAGCA AGAGCTGTGG AGAAAAATGA GATTAAAAAA
  CAAAACAAAA CAAAACATGA AACCAGGTAT TGTTAAGGAC AGTGTGTGTG TGTGTGTGTG
  K
  GGGGGGGGGT CACTATCCGC ATGTAGGGAG GCATGCATAG GAAGAACTTA GAATCCAAGA
  GACCTGAGCC CCAACTCTCA TCTTTCTTCT TAACTTCCCC AGGCCTCACT TTTCTTCTCT
  GTAAAATGAT CAGCTATAGT ATCTACTCCA CTGAGGTATC ACGAGAAGCA TACAGGACAA
  CTATGGGCAG ATGTGATGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss133113931	ENSMUSSNP2130546	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321783460	CHEV_6_35263956	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52575645					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35290891 () rs orientation: forward

Symbol	Name	Function Class
Fam180a	family with sequence similarity 180, member A	within coordinates
Rr140102	regulatory region 140102	1310 bp proximal