rs52577459 SNP Detail

Summary

• ID
  rs52577459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16677559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAGGGAG GGACAGGCAG
  CTCAAGGGCC TTTAAAGCAA TGGACCATGG GTATGGTGGT AGGTGAGAGC TGACCTAAAA
  GTTGTCCTCT GACCTCCATA CATATGCTGT GCACAGGCAT GCCCCACCGC ACATGCATCG
  TACATATGCA CACACACACA CACACACAAA TCATAAATAA AACAAAAATT TCAAAATAAA
  R
  AATTTGGAAT ATCTGGGTAC AGTGGCTCAC ACCTATGATC CCAGCATTCT GAGGCAGGAG
  GATTACCAGG ACTTTGAGGC TAGCCTGGGC TACATAGTGA TATCCTGTTT CAAAAACCAA
  ACCCCAAAAG GATCCAGGTG TGCTAGCATA CAACGTCAAT CCAGCATTCA GCAAGCAAAG
  GCAGAAGGCA GAGGGCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148399934	ENSMUSSNP4737395	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52577459					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16677559 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	820 bp proximal
Gm71929	predicted gene, 71929	1658 bp downstream
Pnma8b	PNMA family member 8B	1048 bp upstream
Rr368243	regulatory region 368243	822 bp upstream
Rr642821	regulatory region 642821	265 bp distal
Rr642822	regulatory region 642822	558 bp proximal
Rr642823	regulatory region 642823	971 bp proximal
Tssr64660	transcription start site region 64660	1011 bp upstream