rs52578848 SNP Detail

Summary

• ID
  rs52578848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:83475258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCCGGTGG GCCCCGACTG AAGTGGTTCT CGCCGCCCCT
  CATCGCTGTA GTGAGGCCGC TGCGCCCCCG CGCTCGCCGC GTCTCCACCC ACGCGCCCGC
  Y
  GCGCCCACTC GGCCGCCCAG GGACCCCCGG CCCGGCCTTT CGATGCTCAC GACTTTCCGC
  GGCTCCTCGG GCTGTGCCTG AAAAAACAAG CTGAGTGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146812154	ENSMUSSNP6377776	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320367675	CHEV_2_83485071	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52578848					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:83475258 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11854	CpG island 11854	within coordinates
Rr57102	regulatory region 57102	within coordinates
Rr397083	regulatory region 397083	338 bp downstream
Tssr18640	transcription start site region 18640	424 bp downstream
Tssr18641	transcription start site region 18641	393 bp downstream
Tssr18642	transcription start site region 18642	367 bp downstream
Tssr18643	transcription start site region 18643	337 bp downstream
Tssr18644	transcription start site region 18644	322 bp downstream
Zc3h15	zinc finger CCCH-type containing 15	within coordinates